Translates antibody levels measured in cross-sectional population samples into estimates of the frequency with which seroconversions (infections) occur in the sampled populations. Replaces the previous 'seroincidence' package. Methods originally published in Simonsen et al. (2009) <doi:10.1002/sim.3592> and Teunis et al. (2012) <doi:10.1002/sim.5322>, and further developed in subsequent publications by de Graaf et al. (2014) <doi:10.1016/j.epidem.2014.08.002>, Teunis et al. (2016) <doi:10.1016/j.epidem.2016.04.001>, and Teunis et al. (2020) <doi:10.1002/sim.8578>.
| Version: |
1.0.3 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
doParallel, dplyr (≥ 1.1.1), foreach, ggplot2, ggpubr, lifecycle, magrittr, mixtools, Rcpp, rlang, rngtools, scales, stats, tibble, tidyr, utils, cli |
| LinkingTo: |
Rcpp |
| Suggests: |
parallel, knitr, rmarkdown, tidyverse, fs, testthat (≥
3.0.0), readr, bookdown, ggbeeswarm, DT |
| Published: |
2024-07-21 |
| DOI: |
10.32614/CRAN.package.serocalculator |
| Author: |
Peter Teunis [aut, cph] (Author of the method and original code.),
Kristina Lai [aut, cre],
Chris Orwa [aut],
Kristen Aiemjoy [aut],
Douglas Ezra Morrison [aut] |
| Maintainer: |
Kristina Lai <kwlai at ucdavis.edu> |
| License: |
GPL-3 |
| URL: |
https://github.com/UCD-SERG/serocalculator,
https://ucd-serg.github.io/serocalculator/ |
| NeedsCompilation: |
yes |
| Language: |
en-US |
| Materials: |
README NEWS |
| CRAN checks: |
serocalculator results [issues need fixing before 2024-11-26] |