R library to access species interaction data of http://globalbioticinteractions.org
To install rglobi from CRAN:
install.packages("rglobi")Or install development version:
install.packages("devtools")
devtools::install_github("ropensci/rglobi")library(rglobi)
# find all unique prey names of Homo sapiens
prey_of("Homo sapiens")$target_taxon_name
# is a shortcut of
get_interactions_by_taxa(sourcetaxon='Homo sapiens', interactiontype='preysOn')$target_taxon_name
# list of supported interactions types
get_interaction_types()
# all known prey names and locations (latitude, longitude) where birds (Aves) preyed on rodents (Rodentia) in California
obs <- get_interactions_by_taxa(sourcetaxon = "Aves", bbox=c(-125.53344800000002,32.750323,-114.74487299999998,41.574361), targettaxon = "Rodentia", returnobservations=TRUE)
locations <- cbind(obs$target_taxon_name, obs$latitude, obs$longitude)Please see R help pages (e.g. ?get_interactions_by_taxa
and vignettes
for more information.
Tests can be executed using devtools package.
# workdir should be rglobi repo root directory (check with getwd())
# install dependencies
devtools::install('.')
devtools::test()This should reload the library, executes the test_that testcases and show test reports.
roxygen2 is used to generate .Rd and NAMESPACE by running:
library(roxygen2)
roxygenize(".")Vignettes are generated using knitr and
markdown packages.
Please report any issues or bugs.
This package is part of the rOpenSci project.
