glmtree
: logistic regression
trees for efficient segmentationlibrary(glmtree)
<- generateData(n = 1000, scenario = "no tree", visualize = TRUE) data
<- sample.int(n = 1000, size = 0.2 * 1000)
int_train
<- data[-int_train, ]
test <- data[int_train, ] data
library(FactoMineR)
<- PCA(data[, c("x1", "x2")]) mixed
$pca1 <- predict(mixed, data)$coord[, 1]
data$pca2 <- predict(mixed, data)$coord[, 2]
data$pca1 <- predict(mixed, test)$coord[, 1]
test$pca2 <- predict(mixed, test)$coord[, 2]
test
$cluster <- ifelse(data$pca1 > 1, 1, ifelse(data$pca1 > 0, 2, 3))
data$cluster <- ifelse(test$pca1 > 1, 1, ifelse(test$pca1 > 0, 2, 3))
test
<- matrix(0, nrow = 0.2 * 1000, ncol = 1)
pred
for (j in 1:3) {
<- glm(y ~ x1 + x2, data = data[data$cluster == j, ], family = binomial(link = "logit"))
modele $cluster == j] <- predict(modele, test[test$cluster == j, ], type = "response")
pred[test
}
normalizedGini(test$y, pred)
## [1] 0.6203462
plot(mixed, choix = "ind", label = "none")
if (require(partykit, quietly = TRUE)) {
<- partykit::glmtree(formula = y ~ x1 + x2 | x1 + x2, data = data, family = binomial)
mob_data plot(mob_data)
normalizedGini(test$y, predict(mob_data, test))
}
##
## Attaching package: 'partykit'
## The following object is masked from 'package:glmtree':
##
## glmtree
## [1] 0.6493551
glmtree
approach<- glmtree::glmtree(x = data[, c("x1", "x2")], y = data$y) tree
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plot(unlist(tree@performance$criterionEvolution), type = "l")
$c_map <- factor(apply(predict(tree@best.tree$tree, data, type = "prob"), 1, function(p) names(which.max(p))))
data$c_map <- factor(apply(predict(tree@best.tree$tree, data, type = "prob"), 1, function(p) names(which.max(p))))
test
table(data$c_map)
##
## 4
## 200
plot(data[, 1], data[, 2], pch = 2 + data[, 3], col = as.numeric(data$c_map), xlab = "First coordinate", ylab = "Second coordinate")
plot(tree@best.tree$tree)
<- matrix(0, nrow = 0.2 * 1000, ncol = 1)
pred
for (j in levels(data$c_map)) {
<- glm(y ~ x1 + x2, data = data[data$c_map == j, ], family = binomial(link = "logit"))
modele $c_map == j] <- predict(modele, test[test$c_map == j, ], type = "response")
pred[test
}
normalizedGini(test$y, pred)
## [1] 0.6493551
<- generateData(n = 1000, scenario = "tree", visualize = TRUE) data
<- sample.int(n = 1000, size = 0.2 * 1000)
int_train
<- data[-int_train, ]
test <- data[int_train, ] data
<- FAMD(data[, c("x1", "x2", "x3")]) mixed
## Warning: ggrepel: 189 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: ggrepel: 189 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
<- predict(mixed, test)$coord[, "Dim 1"] < 0
dim_famd
<- matrix(0, nrow = 0.2 * 1000, ncol = 1)
pred
for (j in c(TRUE, FALSE)) {
<- glm(y ~ x1 + x2 + x3, data = data[dim_famd == j, ], family = binomial(link = "logit"))
modele == j] <- predict(modele, test[dim_famd == j, ], type = "response")
pred[dim_famd
}
normalizedGini(test$y, pred)
## [1] 0.2555439
if (require(partykit, quietly = TRUE)) {
<- partykit::glmtree(formula = y ~ x1 + x2 + x3 | x1 + x2 + x3, data = data, family = binomial)
mob_data plot(mob_data)
normalizedGini(test$y, predict(mob_data, test))
}
## [1] 0.4333233
glmtree
approach<- glmtree::glmtree(x = data[, c("x1", "x2", "x3")], y = data$y) tree
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## The bic criterion for iteration 173 is -297.938705089132
## The bic criterion for iteration 174 is -297.938705089132
## The bic criterion for iteration 175 is -297.938705089132
## The bic criterion for iteration 176 is -297.938705089132
## The bic criterion for iteration 177 is -297.938705089132
## The bic criterion for iteration 178 is -297.938705089132
## The bic criterion for iteration 179 is -297.938705089132
## The bic criterion for iteration 180 is -285.132221024689
## The bic criterion for iteration 181 is -297.938705089132
## The bic criterion for iteration 182 is -297.938705089132
## The bic criterion for iteration 183 is -297.938705089132
## The bic criterion for iteration 184 is -297.938705089132
## The bic criterion for iteration 185 is -297.938705089132
## The bic criterion for iteration 186 is -297.938705089132
## The bic criterion for iteration 187 is -297.938705089132
## The bic criterion for iteration 188 is -297.938705089132
## The bic criterion for iteration 189 is -297.938705089132
## The bic criterion for iteration 190 is -297.938705089132
## The bic criterion for iteration 191 is -297.938705089132
## The bic criterion for iteration 192 is -297.938705089132
## The bic criterion for iteration 193 is -297.938705089132
## The bic criterion for iteration 194 is -297.938705089132
## The bic criterion for iteration 195 is -297.938705089132
## The bic criterion for iteration 196 is -297.938705089132
## The bic criterion for iteration 197 is -297.938705089132
## The bic criterion for iteration 198 is -297.938705089132
## The bic criterion for iteration 199 is -297.938705089132
## The bic criterion for iteration 200 is -285.132221024689
plot(unlist(tree@performance$criterionEvolution), type = "l")
$c_map <- factor(apply(predict(tree@best.tree$tree, data, type = "prob"), 1, function(p) names(which.max(p))))
data$c_map <- factor(apply(predict(tree@best.tree$tree, test, type = "prob"), 1, function(p) names(which.max(p))))
test
table(data$c, data$c_map)
##
## 1 9
## 1 26 25
## 2 38 33
## 3 36 42
plot(data[, 1], data[, 2], pch = 2 + data[, 3], col = as.numeric(data$c_map), xlab = "First coordinate", ylab = "Second coordinate")
plot(tree@best.tree$tree)
<- matrix(0, nrow = 0.2 * 1000, ncol = 1)
pred
for (j in 1:nlevels(data$c_map)) {
$c_map == levels(data$c_map)[j]] <- predict(tree@best.tree$glms[[j]], test[test$c_map == levels(data$c_map)[j], ], type = "response")
pred[test
}
normalizedGini(test$y, pred)
## [1] 0.4415985