allofus
R PackageThe goal of the allofus
R package is to streamline the
use of R within the All of Us
Researcher Workbench. It has 4 primary goals:
tidyverse
ecosystem of R
packages on the Researcher WorkbenchThe allofus
R package was developed by Louisa Smith
and Rob Cavanaugh at Northeastern University and is
not affiliated with or endorsed by the All of Us Research
Program.
Install the released version of allofus
from CRAN:
install.packages("allofus")
Install the development version from Github:
install.packages("pak")
::pak("roux-ohdsi/allofus") pak
Read through the getting started vignette to learn how to use the package.
A community workspace on the All of Us Researcher Workbench will soon be available.
allofus
package as:
Smith LH, Cavanaugh R (2024). “allofus: An R Package to Facilitate Use of the All of Us Researcher Workbench.” Journal of the American Medical Informatics Association, ocae198. doi:10.1093/jamia/ocae198.
or with
citation("allofus")
Note: A pre-print of the special issue can be found here: https://doi.org/10.1101/2024.04.10.24305611
We also encourage you to reference the specific version of the package you use for an analysis. You can look this up with
packageVersion("allofus")
Please leave us comments, requests, and report bugs using the “Issues” tab on github.