Last updated on 2024-11-22 03:52:47 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.28 | 4.50 | 70.97 | 75.47 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.28 | 4.05 | 52.74 | 56.79 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.28 | 130.43 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.28 | 137.73 | OK | |||
| r-devel-windows-x86_64 | 0.28 | 6.00 | 92.00 | 98.00 | ERROR | |
| r-patched-linux-x86_64 | 0.28 | 5.58 | 69.30 | 74.88 | OK | |
| r-release-linux-x86_64 | 0.28 | 5.05 | 69.89 | 74.94 | OK | |
| r-release-macos-arm64 | 0.28 | 49.00 | OK | |||
| r-release-macos-x86_64 | 0.28 | 113.00 | OK | |||
| r-release-windows-x86_64 | 0.28 | 7.00 | 92.00 | 99.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.28 | 53.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.28 | 90.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.28 | 8.00 | 108.00 | 116.00 | ERROR |
Version: 0.28
Check: examples
Result: ERROR
Running examples in 'qtl2fst-Ex.R' failed
The error most likely occurred in:
> ### Name: replace_path
> ### Title: Replace the path used in fst_genoprob object
> ### Aliases: replace_path
>
> ### ** Examples
>
> library(qtl2)
> grav2 <- read_cross2(system.file("extdata", "grav2.zip", package="qtl2"))
> probs <- calc_genoprob(grav2, error_prob=0.002)
> dir <- tempdir()
> fprobs <- fst_genoprob(probs, "grav2", dir, overwrite=TRUE)
writing D:\temp\2024_11_21_01_50_00_28815\Rtmp8EvQ57/grav2_1.fst
writing D:\temp\2024_11_21_01_50_00_28815\Rtmp8EvQ57/grav2_2.fst
writing D:\temp\2024_11_21_01_50_00_28815\Rtmp8EvQ57/grav2_3.fst
writing D:\temp\2024_11_21_01_50_00_28815\Rtmp8EvQ57/grav2_4.fst
writing D:\temp\2024_11_21_01_50_00_28815\Rtmp8EvQ57/grav2_5.fst
>
> # move the probabilities into a different directory
> new_dir <- file.path(tempdir(), "subdir")
> if(!dir.exists(new_dir)) dir.create(new_dir)
> for(file in fst_files(fprobs)) {
+ file.rename(file, file.path(new_dir, basename(file)))
+ }
>
> # revise the path in fprobs
> new_path <- sub(dir, new_dir, fst_path(fprobs))
Warning in sub(dir, new_dir, fst_path(fprobs)) :
TRE pattern compilation error 'Invalid back reference'
Error in sub(dir, new_dir, fst_path(fprobs)) :
invalid regular expression 'D:\temp\2024_11_21_01_50_00_28815\Rtmp8EvQ57', reason 'Invalid back reference'
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.28
Check: examples
Result: ERROR
Running examples in 'qtl2fst-Ex.R' failed
The error most likely occurred in:
> ### Name: replace_path
> ### Title: Replace the path used in fst_genoprob object
> ### Aliases: replace_path
>
> ### ** Examples
>
> library(qtl2)
> grav2 <- read_cross2(system.file("extdata", "grav2.zip", package="qtl2"))
> probs <- calc_genoprob(grav2, error_prob=0.002)
> dir <- tempdir()
> fprobs <- fst_genoprob(probs, "grav2", dir, overwrite=TRUE)
writing D:\temp\2024_11_19_01_50_00_21579\RtmpWaLTfy/grav2_1.fst
writing D:\temp\2024_11_19_01_50_00_21579\RtmpWaLTfy/grav2_2.fst
writing D:\temp\2024_11_19_01_50_00_21579\RtmpWaLTfy/grav2_3.fst
writing D:\temp\2024_11_19_01_50_00_21579\RtmpWaLTfy/grav2_4.fst
writing D:\temp\2024_11_19_01_50_00_21579\RtmpWaLTfy/grav2_5.fst
>
> # move the probabilities into a different directory
> new_dir <- file.path(tempdir(), "subdir")
> if(!dir.exists(new_dir)) dir.create(new_dir)
> for(file in fst_files(fprobs)) {
+ file.rename(file, file.path(new_dir, basename(file)))
+ }
>
> # revise the path in fprobs
> new_path <- sub(dir, new_dir, fst_path(fprobs))
Warning in sub(dir, new_dir, fst_path(fprobs)) :
TRE pattern compilation error 'Invalid back reference'
Error in sub(dir, new_dir, fst_path(fprobs)) :
invalid regular expression 'D:\temp\2024_11_19_01_50_00_21579\RtmpWaLTfy', reason 'Invalid back reference'
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.28
Check: examples
Result: ERROR
Running examples in 'qtl2fst-Ex.R' failed
The error most likely occurred in:
> ### Name: replace_path
> ### Title: Replace the path used in fst_genoprob object
> ### Aliases: replace_path
>
> ### ** Examples
>
> library(qtl2)
> grav2 <- read_cross2(system.file("extdata", "grav2.zip", package="qtl2"))
> probs <- calc_genoprob(grav2, error_prob=0.002)
> dir <- tempdir()
> fprobs <- fst_genoprob(probs, "grav2", dir, overwrite=TRUE)
writing D:\temp\2024_11_20_01_50_01_8813\RtmpKG2gHq/grav2_1.fst
writing D:\temp\2024_11_20_01_50_01_8813\RtmpKG2gHq/grav2_2.fst
writing D:\temp\2024_11_20_01_50_01_8813\RtmpKG2gHq/grav2_3.fst
writing D:\temp\2024_11_20_01_50_01_8813\RtmpKG2gHq/grav2_4.fst
writing D:\temp\2024_11_20_01_50_01_8813\RtmpKG2gHq/grav2_5.fst
>
> # move the probabilities into a different directory
> new_dir <- file.path(tempdir(), "subdir")
> if(!dir.exists(new_dir)) dir.create(new_dir)
> for(file in fst_files(fprobs)) {
+ file.rename(file, file.path(new_dir, basename(file)))
+ }
>
> # revise the path in fprobs
> new_path <- sub(dir, new_dir, fst_path(fprobs))
Warning in sub(dir, new_dir, fst_path(fprobs)) :
TRE pattern compilation error 'Invalid back reference'
Error in sub(dir, new_dir, fst_path(fprobs)) :
invalid regular expression 'D:\temp\2024_11_20_01_50_01_8813\RtmpKG2gHq', reason 'Invalid back reference'
Execution halted
Flavor: r-oldrel-windows-x86_64