CRAN Package Check Results for Package epidatr

Last updated on 2025-02-10 03:49:17 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.0 6.91 69.31 76.22 OK
r-devel-linux-x86_64-debian-gcc 1.2.0 4.43 51.88 56.31 OK
r-devel-linux-x86_64-fedora-clang 1.2.0 130.11 OK
r-devel-linux-x86_64-fedora-gcc 1.2.0 126.89 OK
r-devel-windows-x86_64 1.2.0 11.00 96.00 107.00 ERROR
r-patched-linux-x86_64 1.2.0 6.94 64.73 71.67 OK
r-release-linux-x86_64 1.2.0 5.28 64.77 70.05 OK
r-release-macos-arm64 1.2.0 59.00 OK
r-release-macos-x86_64 1.2.0 126.00 OK
r-release-windows-x86_64 1.2.0 11.00 101.00 112.00 OK
r-oldrel-macos-arm64 1.2.0 74.00 OK
r-oldrel-macos-x86_64 1.2.0 115.00 OK
r-oldrel-windows-x86_64 1.2.0 10.00 118.00 128.00 OK

Check Details

Version: 1.2.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'epidatr.Rmd' using rmarkdown Quitting from lines 77-91 [unnamed-chunk-2] (epidatr.Rmd) Error: processing vignette 'epidatr.Rmd' failed with diagnostics: epidata error: `database error: (builtins.AttributeError) 'NoneType' object has no attribute 'cursor' [SQL: SELECT t.geo_value, t.signal, t.time_value, t.direction, t.issue, t.lag, t.missing_value, t.missing_stderr, t.missing_sample_size, t.value, t.stderr, t.sample_size FROM epimetric_latest_v t WHERE ((t.source = %s AND (t.signal = %s))) AND ((t.geo_type = %s AND (t.geo_value = %s))) AND ((t.time_type = %s AND (t.time_value BETWEEN %s AND %s))) ORDER BY t.signal ASC, t.time_value ASC, t.geo_value ASC, t.issue ASC LIMIT 3651] [parameters: [{'source_0t': 'fb-survey', 'source_0t_0': 'smoothed_cli', 'geo_type_0t': 'nation', 'geo_type_0t_0': 'us', 'time_type_0t': 'day', 'time_type_0t_0': 20210105, 'time_type_0t_0_2': 20210410}]]` --- failed re-building 'epidatr.Rmd' --- re-building 'signal-discovery.Rmd' using rmarkdown --- finished re-building 'signal-discovery.Rmd' --- re-building 'versioned-data.Rmd' using rmarkdown Quitting from lines 52-62 [unnamed-chunk-2] (versioned-data.Rmd) Error: processing vignette 'versioned-data.Rmd' failed with diagnostics: epidata error: `` database error: (builtins.AttributeError) 'NoneType' object has no attribute 'cursor' [SQL: SELECT t.geo_value, t.signal, t.time_value, t.direction, t.issue, t.lag, t.missing_value, t.missing_stderr, t.missing_sample_size, t.value, t.stderr, t.sample_size FROM epimetric_full_v t JOIN (SELECT max(issue) max_issue, time_type, time_value, `source`, `signal`, geo_type, geo_value FROM epimetric_full_v t WHERE ((t.source = %s AND (t.signal = %s))) AND ((t.geo_type = %s AND (t.geo_value = %s))) AND ((t.time_type = %s AND (t.time_value = %s))) AND (issue <= %s) GROUP BY time_type, time_value, `source`, `signal`, geo_type, geo_value) x ON x.max_issue = t.issue AND x.time_type = t.time_type AND x.time_value = t.time_value AND x.source = t.source AND x.signal = t.signal AND x.geo_type = t.geo_type AND x.geo_value = t.geo_value WHERE ((t.source = %s AND (t.signal = %s))) AND ((t.geo_type = %s AND (t.geo_value = %s))) AND ((t.time_type = %s AND (t.time_value = %s))) ORDER BY t.signal ASC, t.time_value ASC, t.geo_value ASC, t.issue ASC LIMIT 3651] [parameters: [{'source_0t': 'doctor-visits', 'source_0t_0': 'smoothed_adj_cli', 'geo_type_0t': 'state', 'geo_type_0t_0': 'pa', 'time_type_0t': 'day', 'time_type_0t_0': 20200501, 'as_of': 20200507}]] `` --- failed re-building 'versioned-data.Rmd' SUMMARY: processing the following files failed: 'epidatr.Rmd' 'versioned-data.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64