CRAN Package Check Results for Package PhenotypeR

Last updated on 2025-02-10 03:49:26 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.2 4.61 529.58 534.19 OK
r-devel-linux-x86_64-debian-gcc 0.1.2 3.32 421.68 425.00 OK
r-devel-linux-x86_64-fedora-clang 0.1.2 833.77 OK
r-devel-linux-x86_64-fedora-gcc 0.1.2 859.68 OK
r-devel-windows-x86_64 0.1.2 7.00 291.00 298.00 OK
r-patched-linux-x86_64 0.1.2 4.95 529.31 534.26 OK
r-release-linux-x86_64 0.1.2 4.42 535.59 540.01 OK
r-release-macos-arm64 0.1.2 414.00 ERROR
r-release-macos-x86_64 0.1.2 480.00 OK
r-release-windows-x86_64 0.1.2 6.00 291.00 297.00 OK
r-oldrel-macos-arm64 0.1.0 224.00 OK
r-oldrel-macos-x86_64 0.1.0 349.00 OK
r-oldrel-windows-x86_64 0.1.2 10.00 389.00 399.00 OK

Check Details

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘a01_DatabaseDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Warning in close.connection(con) : Problem closing connection: No space left on device Quitting from lines 35-49 [unnamed-chunk-3] (a01_DatabaseDiagnostics.Rmd) Error: processing vignette 'a01_DatabaseDiagnostics.Rmd' failed with diagnostics: rapi_execute: Failed to run query Error: IO Error: Could not write file "/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmpgB0AtE/synpuf-1k_5.3_1.1.duckdb": No space left on device --- failed re-building ‘a01_DatabaseDiagnostics.Rmd’ --- re-building ‘a02_CodelistDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Quitting from lines 30-55 [unnamed-chunk-2] (a02_CodelistDiagnostics.Rmd) Error: processing vignette 'a02_CodelistDiagnostics.Rmd' failed with diagnostics: rapi_execute: Failed to run query Error: IO Error: Could not write file "/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmpPxkA5s/synpuf-1k_5.3_1.1.duckdb": No space left on device --- failed re-building ‘a02_CodelistDiagnostics.Rmd’ --- re-building ‘a03_CohortDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Warning in file(con, "w") : cannot open file 'a03_CohortDiagnostics.knit.md': No space left on device Error: processing vignette 'a03_CohortDiagnostics.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘a03_CohortDiagnostics.Rmd’ --- re-building ‘a04_MatchedDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB --- finished re-building ‘a04_MatchedDiagnostics.Rmd’ --- re-building ‘a05_PopulationDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Warning in close.connection(con) : Problem closing connection: No space left on device Quitting from lines 27-48 [unnamed-chunk-2] (a05_PopulationDiagnostics.Rmd) Error: processing vignette 'a05_PopulationDiagnostics.Rmd' failed with diagnostics: rapi_execute: Failed to run query Error: IO Error: Could not write file "/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmpY135Fu/synpuf-1k_5.3_1.1.duckdb": No space left on device --- failed re-building ‘a05_PopulationDiagnostics.Rmd’ SUMMARY: processing the following files failed: ‘a01_DatabaseDiagnostics.Rmd’ ‘a02_CodelistDiagnostics.Rmd’ ‘a03_CohortDiagnostics.Rmd’ ‘a05_PopulationDiagnostics.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-arm64