Package: r.jive
Type: Package
Title: Perform JIVE Decomposition for Multi-Source Data
Authors@R: c(person("Michael J.", "O'Connell", role=c("aut","cre"),
                    email="oconnemj@miamioh.edu"),
             person("Eric F.", "Lock", role="aut"),
             person("Adam", "Kaplan", role="ctb"))
Version: 2.4
Date: 2020-11-11
Author: Michael J. O'Connell [aut, cre],
  Eric F. Lock [aut],
  Adam Kaplan [ctb]
Maintainer: Michael J. O'Connell <oconnemj@miamioh.edu>
Description: Performs the Joint and Individual Variation Explained (JIVE) decomposition on a list of data sets when the data share a dimension, returning low-rank matrices that capture the joint and individual structure of the data [O'Connell, MJ and Lock, EF (2016) <doi:10.1093/bioinformatics/btw324>]. It provides two methods of rank selection when the rank is unknown, a permutation test and a Bayesian Information Criterion (BIC) selection algorithm. Also included in the package are three plotting functions for visualizing the variance attributed to each data source: a bar plot that shows the percentages of the variability attributable to joint and individual structure, a heatmap that shows the structure of the variability, and principal component plots. 
License: GPL-3
Imports: gplots, abind, graphics, stats
Suggests: knitr, rmarkdown
Depends: R(>= 2.10.0)
VignetteBuilder: knitr
Packaged: 2020-11-12 02:50:38 UTC; Eric
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2020-11-17 08:10:08 UTC
Built: R 4.6.0; ; 2025-11-13 03:11:45 UTC; windows
